fastx_reader
FastQ and Fasta readers for NIM
Summary
| Latest Version | 0.1.0 |
|---|---|
| License | LGPL-3.0 |
| CI Status | Failing |
| Downloads | 0 |
| Last Indexed | 2026-09-03 07:22 |
Tags
Authors
- Andreas Hauser
Installation
nimble install fastx_reader
choosenim install fastx_reader
git clone https://github.com/ahcm/fastx_reader
OS Compatibility
| Platform | Linux | macOS | Windows | FreeBSD | OpenBSD | NetBSD | Android | iOS | WASM | Embedded |
|---|---|---|---|---|---|---|---|---|---|---|
| fastx_reader | ✓ | ✓ | ✓ | - | - | - | - | - | - | - |
Dependencies
| Package | Version | Optional |
|---|---|---|
| nim >= | 0.20.0 | No |
Source
| Repository | https://github.com/ahcm/fastx_reader |
|---|---|
| Homepage | https://github.com/ahcm/fastx_reader |
| Documentation | View Documentation |
| Registry Source | nimble_official |
README
fastx_reader
FastQ and Fasta readers for NIM
Usage
```nim import os let args = commandLineParams() let filename = args[0] case filename[^1] of 'a': for name, sequence in fasta_reader(open(filename)): echo filename, " ", name," ", len(sequence) of 'q': for name, sequence , quality in fastq_reader(open(filename)): echo filename, " ", name," ", len(sequence) else: echo "Don't know whether file is Fasta or FastQ from filename"