kmer
dna kmer ops for nim
Summary
| Latest Version | 0.2.6 |
|---|---|
| License | MIT |
| CI Status | Failing |
| Downloads | 0 |
| Last Indexed | 2026-08-31 07:16 |
Tags
Authors
- Brent Pedersen
Installation
nimble install kmer
choosenim install kmer
git clone https://github.com/brentp/nim-kmer
OS Compatibility
| Platform | Linux | macOS | Windows | FreeBSD | OpenBSD | NetBSD | Android | iOS | WASM | Embedded |
|---|---|---|---|---|---|---|---|---|---|---|
| kmer | ✓ | ✓ | ✓ | - | - | - | - | - | - | - |
Dependencies
| Package | Version | Optional |
|---|---|---|
| nim >= 0.17.2" #, | "nim-lang/c2nim>=0.9.13 | No |
Source
| Repository | https://github.com/brentp/nim-kmer |
|---|---|
| Homepage | https://github.com/brentp/nim-kmer |
| Documentation | View Documentation |
| Registry Source | nimble_official |
README
this module allows encoding kmers of length up to 31 into uint64's
it is as fast as possible and allows reverse-complenting on encoded data and adding a single base to the right end or a complemented base for the left end as is needed when sliding along a sequence to generate all kmers.