unoisenim
Nim library for USEARCH algorithms unoise and sintax.
Summary
| Latest Version | 0.2.0 |
|---|---|
| License | GPL-3.0 |
| CI Status | Failing |
| Downloads | 0 |
| Last Indexed | 2026-08-11 05:40 |
Tags
Authors
- Andrea Telatin
Installation
nimble install unoisenim
choosenim install unoisenim
git clone https://github.com/telatin/unoisenim
OS Compatibility
| Platform | Linux | macOS | Windows | FreeBSD | OpenBSD | NetBSD | Android | iOS | WASM | Embedded |
|---|---|---|---|---|---|---|---|---|---|---|
| unoisenim | ✓ | ✓ | ✓ | - | - | - | - | - | - | - |
Dependencies
| Package | Version | Optional |
|---|---|---|
| nim >= | 2.0.0 | No |
| readfx >= | 0.3.1 | No |
| argparse >= | 4.0.0 | No |
| malebolgia >= | 1.3.0 | No |
Source
| Repository | https://github.com/telatin/unoisenim |
|---|---|
| Homepage | https://telatin.github.io/unoisenim/ |
| Documentation | View Documentation |
| Registry Source | nimble_official |
README
unoisenim
Nim library implementing USEARCH algorithms for 16S/ITS amplicon sequencing analysis.
Algorithms
- UNOISE3 — error correction and ZOTU clustering (
unoisenim/unoise_algo) - SINTAX — k-mer bootstrap taxonomic classifier (
unoisenim/sintax_algo) - UCHIME2 — chimera detection (
unoisenim/uchime2_algo) - NBC — Naive Bayesian Classifier, RDP-style (
unoisenim/nbc_algo)
Citations
Edgar RC. UNOISE2: improved error-correction for Illumina 16S and ITS amplicon sequencing. bioRxiv 081257; doi: 10.1101/081257
Edgar RC. SINTAX: a simple non-Bayesian taxonomy classifier for 16S and ITS sequences. bioRxiv 074161; doi: 10.1101/074161
Wang Q, Garrity GM, Tiedje JM, Cole JR. Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy. Appl Environ Microbiol. 2007; doi: 10.1128/AEM.00062-07